Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYTGSLYLSLISLLQNHT-FQPEEKVCLFSYGSGAVGEIFSGSIVKGYDKALDKEKHLNMLESREQLSVEEYETFFNRFDNQEFDFERELTQDPYSKVYLYSIEDHIRTYKIEK
2HDB Chain:A ((276-382))
LYTGSLYLGLISLLENATTLTAGNQIGLFSYGSGAVAEFFTGELVAGYQNHLQKETHLALLDNRTELSIAEYEAMF----AETLDTDIDQTLEDELKYSISAINNTVRSYR---
General information:
TITO was launched using:
RESULT:
Template:
2HDB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -19148 for 501 contacts (-38.2/contact) +
2D Compatibility (PS) -11178 + (NN) -3974 + (LL) 448
1D Compatibility (HY) -11600 + (ID) 2400
Total energy: -47852.0 ( -95.51 by residue)
QMean score : 0.365
(partial model without unconserved sides chains):
PDB file :
Tito_2HDB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2HDB-query.scw
PDB file :
Tito_Scwrl_2HDB.pdb
: