Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIMFVLCGFIFPLTVTALGQVLFPEQANGSLVKQDGKVIGSKLIGQQWTEPKYFHGRISAVNYNMNANEVKESGGPASGGSNYGNSNPELKKRVQETIKQEGKKISSDAVTASGSGLDPDITV
2YJ3 Chain:A ((164-208))
-------------------------------------------------------------------DKVKELSKELNIQEYYSNLSPEDKVRIIEKLKQNGNKV------------------
General information:
TITO was launched using:
RESULT:
Template:
2YJ3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 8945 for 162 contacts (55.2/contact) +
2D Compatibility (PS) -4086 + (NN) -1278 + (LL) 5076
1D Compatibility (HY) -1600 + (ID) 700
Total energy: 6357.0 ( 39.24 by residue)
QMean score : 0.550
(partial model without unconserved sides chains):
PDB file :
Tito_2YJ3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YJ3-query.scw
PDB file :
Tito_Scwrl_2YJ3.pdb
: