Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MNREMLYLNRSDIEQAGGNHSQVYVDALTEALTAHAHNDFVQPLKPYLRQDPENGHIADRIIAMPSHIGGEHAISGIKWIGSKHDNPSKRNMERASGVIILNDPETNYPIAVMEASLISSMRTAAVSVIAAKHLAKKGFKDLTIIGCGLIGDKQLQSMLEQFDHIKRVFVYDQFSEACARFVDRWQQQRPEINFIATENAKEAVSNGEVVITCTVTDQPYIEYDWLQKGAFISNISIMDVHKEVFIKADKVVVDDWSQCNREKKTINQLVLEGK-----------FSKEALHAELGQLVTGDIPGREDDDEIILLNPMGMAIEDISSAYFIYQQAQQQNIGTTLNLY |
4BV8 Chain:A ((84-328)) | ---------------------------------------------------------------MPAYSAAEDALT-TKLV-TFYE-------PSHQASVLLFDPSNGSLLAVMDGNVITAKRTAAVSAIATKLLKPPGSDVLCILGAGVQAYSHYEIFTEQFS-FKEVRMWNRTRENAEKFASTVQG-----DVRVCSSVQEAVTGADVIITVTMATEPILFGEWVKPGAHINAVGASR--------------PDWRELDDELMRQAVLYVDSREAALKESGDVLLSGADIFAELGEVISGAKPAH--CEKTTVFKSLGMAVEDLVAAKLVY--------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4BV8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -123955 for 1906 contacts (-65.0/contact) +
2D Compatibility (PS) -24378 + (NN) -8801 + (LL) 7176
1D Compatibility (HY) -14400 + (ID) 3250
Total energy: -167608.0 ( -87.94 by residue)
QMean score : 0.402
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