Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEKNVEKSFIKIGLYFQIAYIVLMAITLCGFVICYGLIFGLFYLLSGSRADYLIVTIVISAIISIFVIILSIVPVIVLASDLFKERISKGVIL-IVLAIIALVLCNFVSAILWFVSAISILGRKKLVAAADTTTIQKSKGNANQASHKDTCKKELDSQDMMEHPEVKNPTTKNLEGFNEEIHKDEATTKVVSDNTEPPIESKGHVSKKD
3TE1 Chain:A ((165-259))
---------------------------LCNILVCVSVLCS-FRTNSDTAKIIMIFLCLFAFITSGFE--HSVANMTIYSVSLFSPTISTVTIGGAIYNLVAVTLGNIVGGALFMGLGTYILGKEK------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3TE1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -100761 for 570 contacts (-176.8/contact) +
2D Compatibility (PS) -9235 + (NN) 530 + (LL) 7804
1D Compatibility (HY) -9600 + (ID) 1200
Total energy: -112462.0 ( -197.30 by residue)
QMean score : 0.325
(partial model without unconserved sides chains):
PDB file :
Tito_3TE1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TE1-query.scw
PDB file :
Tito_Scwrl_3TE1.pdb
: