Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MCLNFREDNVMKKIMVIFGTRPEAIKMAPLVKEIDHNGNFEANIVITAQHRDMLDSVLSIFDIQAD-----HDLNIMQDQQTLADLTANALAKLDSIINEEQPDMILVHGDTTTTFVGSLAAFYHQIPVGHVEAGLRTHQKYSPFPEELNRVMVSNIAELNFAPTVIAAKNLLFENKDKERIFITGNTVIDA----LSTTVQNDFVSTIINKHK-GKKVILLTAHRRENI--GEPMHQIFKAVRDLADEYKDVVFIYPMHRNPKVRAIAEKY-----LSGRNRIELIEPLDAIEFHNFTNQSYLVLTDSGGIQEEAPTFGKPVLVLRNHTERPEGVEAGTSRVIGTDYDNIVRNVKQLIEDDEAYQRMSQANNPYGDGQASRRICEAIEYYFGLRSDKPDEFVPLRHK |
| 4NEQ Chain:A ((2-363)) | ------------KLSIILGTRPEIIKLSPIIRALEKT-NIDWHIIHTN-------NMDKIFFEELNLPNPKYNLNI--GSGTHGEQTGKMLIEIEKVLLKEKPDVVVVQGDTNTVLAGALVASKLKIDVAHVEAGLRSFDRNMP--EEINRVLTDHISSYLFAPTEIAKNNLLREGIEENKIFVVGNTIVDATLQNLKIAEKNENVRAFFNSVVIDDDYFLLTLHRAENVDNKERLKNIVEGIFEIIEIY-DKAIIFSIH--PRTKKRLKEFNLFDKLKSNKKIKIIEPVGYLEFLMLEKNAELILTDSGGVQEEACILKVPCITLRDNTERPETVEVGANILVGDNKEKLIKAVEIMLNKKRNWK------NPFGNGKSGERIVRILTY------------------ |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4NEQ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -162304 for 2818 contacts (-57.6/contact) +
2D Compatibility (PS) -36844 + (NN) -13725 + (LL) 2940
1D Compatibility (HY) -29200 + (ID) 6050
Total energy: -245183.0 ( -87.01 by residue)
QMean score : 0.490
|
|
|