Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLKLHKKIAWTGIKGSAITTFITALYNGSSVWNALAVAGIAFGGGAGTAVAALGRATVMRFIKRWGVRKTAAW
1JKO Chain:C ((33-46))
----------------------------------------------------IGVSTLYRYFPASS-------
General information:
TITO was launched using:
RESULT:
Template:
1JKO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -3990 for 48 contacts (-83.1/contact) +
2D Compatibility (PS) -1517 + (NN) -414 + (LL) 4552
1D Compatibility (HY) -1600 + (ID) 150
Total energy: -3119.0 ( -64.98 by residue)
QMean score : -0.046
(partial model without unconserved sides chains):
PDB file :
Tito_1JKO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JKO-query.scw
PDB file :
Tito_Scwrl_1JKO.pdb
: