Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKNDLLVMSVVYILTSVIMFYINGLSKQFFTYVVGFPIIYFGYICLVNLIKKRSRNN
1WVT Chain:A ((137-153))
----------------EVHAKYLNRLSSLLFVL-------------------------
General information:
TITO was launched using:
RESULT:
Template:
1WVT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -2420 for 58 contacts (-41.7/contact) +
2D Compatibility (PS) -1698 + (NN) 484 + (LL) 3636
1D Compatibility (HY) -1600 + (ID) 300
Total energy: -1898.0 ( -32.72 by residue)
QMean score : -0.235
(partial model without unconserved sides chains):
PDB file :
Tito_1WVT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1WVT-query.scw
PDB file :
Tito_Scwrl_1WVT.pdb
: