Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKVLYITAHPFNELVSNSMAAGKAFIETYQQQHPDDEVKHIDLFETYIPVIDKDVLTGWGKMSNGETLTDDEQMKVSRLSDILEEFLSADKYVFVTPMWNLSFPPVVKAYIDAISIAGKTFKYSAEGPQGLLTDKKVLHIQSRGGYYTEGPAADFEMGDRYLRTIMTFLGVPSYETIIIEGHNAEPHKTEEIKATSINNAEKLATTF
4ESE Chain:A ((4-192))
MSKVLVLKSSILAT-SSQSNQLADFFVEQWQAAHAGDQITVRDLAAQPIPVLDGELVGAL--RPSGTALTPRQQEALALSDELIAELQANDVIVIAAPMYNFNIPTQLKNYFDMIARAGVTFRYTEKGPEGLVTGKRAIILTSRG-----------DLVVPYLRLFLGFIGITDVEFVFAEGIAYGPEVATKAQA-------------
General information:
TITO was launched using:
RESULT:
Template:
4ESE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -101911 for 1334 contacts (-76.4/contact) +
2D Compatibility (PS) -19147 + (NN) -6592 + (LL) 1204
1D Compatibility (HY) -14000 + (ID) 2800
Total energy: -143246.0 ( -107.38 by residue)
QMean score : 0.591
(partial model without unconserved sides chains):
PDB file :
Tito_4ESE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4ESE-query.scw
PDB file :
Tito_Scwrl_4ESE.pdb
: