Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNKISKYIAIASLSVAVTVSAPQTTNSTAFAKSSAEVQQTQQASIPASQKANLGNQNIMAVAWYQNSAEAKALYLQGYNSAKTQLDKEIKKNKGKHKLAIALDLDETVLDNSPYQGYASIHNKPF-PEGWHEWVQAAKAKPVYGAKEFLKYADKKGVDIYYISDRDKEKDLKATQKNLKQQGIPQAKKSHILLKGKDDKSKESRRQMVQK-DHKLVMLFGDNLLDFTDPKEATAES-REALIEKHKDDFGKKYIIFPNPMYGSWEATIYNNNYKASDKAKDKLRKNAIKQFDPKTGEVK |
| 3OCV Chain:A ((16-254)) | ----------------------------------------------------LQQQAVLGLNWMQDSGEYKALAYQAYNAAKVAFDHAKVAKG--KKKAVVADLNETMLDNSPYAGWQVQNNKPFDGKDWTRWVDARQSRAVPGAVEFNNYVNSHNGKVFYVTNRKDSTEKSGTIDDMKRLGFNGVEESAFYLK-KDKSAKAARFAEIEKQGYEIVLYVGDNLDDFGNTVYGKLNADRRAFVDQNQGKFGKTFIMLPNANYGGWEGGLAEGYFKKDTQGQIKARLDAVQAWDGK----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3OCV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 16897 for 1791 contacts (9.4/contact) +
2D Compatibility (PS) -25554 + (NN) -15904 + (LL) 4160
1D Compatibility (HY) -15600 + (ID) 4000
Total energy: -40001.0 ( -22.33 by residue)
QMean score : 0.450
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