Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTREPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRLDQEDLKFHEKVIEGYQEIIHNESQRFKSVNADQPLENVVEDTYQTIIKYLEKI
4HEJ Chain:A ((2-203))
-SAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTREPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKN----NRLDQEDLKFHEKVIEGYQEIIHNESQRFKSVNADQPLENVVEDTYQTIIKYLE--
General information:
TITO was launched using:
RESULT:
Template:
4HEJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -98344 for 1589 contacts (-61.9/contact) +
2D Compatibility (PS) -22190 + (NN) -13896 + (LL) 592
1D Compatibility (HY) -28800 + (ID) 9900
Total energy: -172538.0 ( -108.58 by residue)
QMean score : 0.694
(partial model without unconserved sides chains):
PDB file :
Tito_4HEJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4HEJ-query.scw
PDB file :
Tito_Scwrl_4HEJ.pdb
: