Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVLNLGSKKQASFYVACELYKEM-AF----NQHCKLGLATGGTMTDLYEQLVKLLNKNQLNVDNVSTFNLDEYVGLTASHPQSYHYYMDDMLFKQYPYFNRKNIHIPNGDADDMNAEASKYNDVLEQQGQRDIQILGIGENGHIGFNEPGTPFDSVTHIVDLTESTIKANSRYFKNE-DDVPKQAISMGLANILQAKRIILLAFGEKKRAAITHLLNQEISVDVPATLLHKHPNVEIYLDDEACPKNVAKIHVDEMD
1CD5 Chain:A ((1-243))
MRLIPLTTAEQVGKWAARHIVNRINAFKPTADRPFVLGLPTGGTPMTTYKALVEMHKAGQVSFKHVVTFNMDEYVGLPKEHPESYYSFMHRNFFDHVD-IPAENINLLNGNAPDIDAECRQYEEKIRSYGKIHLFMGGVGNDGHIAFNEPASSLASRTRIKTLTHDTRVANSRFFDNDVNQVPKYALTVGVGTLLDAEEVMILVLGSQKALALQAAVEGCVNHMWTISCLQLHPKAIMVCDEPS--------------
General information:
TITO was launched using:
RESULT:
Template:
1CD5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -133105 for 1983 contacts (-67.1/contact) +
2D Compatibility (PS) -25896 + (NN) -15968 + (LL) 992
1D Compatibility (HY) -20000 + (ID) 3950
Total energy: -197927.0 ( -99.81 by residue)
QMean score : 0.580
(partial model without unconserved sides chains):
PDB file :
Tito_1CD5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1CD5-query.scw
PDB file :
Tito_Scwrl_1CD5.pdb
: