Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRTPIIAGNWKMNKTVQEAKDFVNALPTLPDSKEVESVICAPAIQLDALTTAVKEGKAQGLEIGAQNTYFEDNGAFTGETSPVALADLGVKYVVIGHSERRELFHETDEEINKKAHAIFKHGMTPIICVGETDEERESGKANDVVGEQVKKAVAGLSEDQLKSVVIAYEPIWAIGTGKSSTSEDANEMCAFVRQTIADLSSKEVSEATRIQYGGSVKPNNIKEYMAQTDIDGALVGGASLKVEDFVQLLEGAK
4Y8F Chain:A ((4-249))
MRTPIIAGNWKMHYTIDEAVKLVEELKPLVKDAKCEVVVCPTFVCLDAVKKAVE---GTNIKVGAQNMHFEEKGAFTGEIAPRMLEAMNIDYVIIGHSERREYFNETDETCNKKVKAAFAHNLTPILCCGETLEQRENGTTNDVIKAQITADLEGLTKEQAEKVVIAYEPIWAIGTGKTATSDQANETIAAIRAMVAEMFGQEVADKVRIQYGGSVKPNTIAEQMAKSDIDGALVGGASLVAADFAQIV----
General information:
TITO was launched using:
RESULT:
Template:
4Y8F.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -107784 for 2097 contacts (-51.4/contact) +
2D Compatibility (PS) -27097 + (NN) -13981 + (LL) 136
1D Compatibility (HY) -23200 + (ID) 6700
Total energy: -178626.0 ( -85.18 by residue)
QMean score : 0.625
(partial model without unconserved sides chains):
PDB file :
Tito_4Y8F.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4Y8F-query.scw
PDB file :
Tito_Scwrl_4Y8F.pdb
: