Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLTMKDIIRDGHPTLRQKAAELELPLTKEEKETLIAMREFLVNSQDEEIAKRYGLRSGVGLAAPQINISKRMIAVLIPDDGSGKSYDYMLVNPKIVSHSVQEAYLPTGEGCLSVDDNVAGLVHRHNRITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNGVMFYDHIDKNHPLQPHTDAVEV
3CMD Chain:A ((10-186))
MITMDDIIREGNPTLREVAKEVSLPLSEEDISLGKEMLEFLKNSQDPIKAEELHLRGGVGLAAPQLDISKRIIAVHVPS-----SLSTVMYNPKILSHSVQDACLGEGEGCLSVDREVPGYVVRHAKITVSYYDMNGEKHKIRLKNYESIVVQHEIDHINGVMFYDHINDQNPF---------
General information:
TITO was launched using:
RESULT:
Template:
3CMD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -86599 for 1312 contacts (-66.0/contact) +
2D Compatibility (PS) -18049 + (NN) -7515 + (LL) 248
1D Compatibility (HY) -18800 + (ID) 4800
Total energy: -135515.0 ( -103.29 by residue)
QMean score : 0.769
(partial model without unconserved sides chains):
PDB file :
Tito_3CMD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3CMD-query.scw
PDB file :
Tito_Scwrl_3CMD.pdb
: