Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKDLPIIALDFESKEKVNQFL-DLFDESLFVKVGMELFYQEGPQLINEIKE-RGHDVFLDLKLHDIPNTVGKAMEGLAKLNVDLVNVHAAGGVKMMSEAIKGLRKHNQHTKIIAVTQLTSTTEDMLRHEQNIQTSIEEAVLNYAKLANAAGLDGVVCSPLESRMLTEKLGTSFLKVTPGIRPKGASQDDQHRITTPEEARQLGSTHIVVGRPITQSDNPVESYHKIKESWLV
3RU6 Chain:A ((28-246))
-----CVALDLSTKEECLQLAKELKNLDIWLKVGLRAYLRDGFKFIEELKKVDDFKIFLDLKFHDIPNTMADACEEVSKLGVDMINIHASAGKIAIQEVMTRLSKFSKRPLVLAVSALTSFDEENFF--SIYRQKIEEAVINFSKISYENGLDGMVCSVFESKKIKEHTSSNFLTLTPGIRPFG--------VANLAMARENLSDYIVVGRPIYKNENPRAVCEKI------
General information:
TITO was launched using:
RESULT:
Template:
3RU6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -118295 for 1682 contacts (-70.3/contact) +
2D Compatibility (PS) -23078 + (NN) -11308 + (LL) 1392
1D Compatibility (HY) -20800 + (ID) 4200
Total energy: -176289.0 ( -104.81 by residue)
QMean score : 0.681
(partial model without unconserved sides chains):
PDB file :
Tito_3RU6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RU6-query.scw
PDB file :
Tito_Scwrl_3RU6.pdb
: