Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIDYLTLFPEMFDGVLNHSIMKRAQENNKLQINTVNFRDYAINKHNQVDDYPYGGGQGMVLKPEPVFNAMEDLDVTEQTR--VILMCPQGEPFSHQKAVELSKADHIVFICGHYEGYDERIRTHLVTDEISMGDYVLTGGELPAMTMTDAIVRLIPGVLGNEQSHQDDSFSDGLLEFPQYTRPREFKGLTVPDVLLSGNHANIDAWRHEQKLIRTYNKRPDLIEKYPLTNEDKQILERYKIGLKKG
4YVG Chain:A ((21-258))
MWIGVISLFPEMFKAITEFGVTGRAVKHNLLKVECWNPRDFTFDKHKTVDDRPYGGGPGMLMMVQPLRDAIHTAKAAAGEGAKVIYLSPQGRKLDQGGVTELAQNQKLILVCGRYEGIDERLIQTEIDEEWSIGDYVLTGGELPAMTLIDAVARFIPGVL--------DSFADGLLDCPHYTRPEVLEGLTVPPVLMSGHHEEIRKWRLKQSLQRTWLRRPELLEGLALTDEQRKLLK---------
General information:
TITO was launched using:
RESULT:
Template:
4YVG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -133187 for 1654 contacts (-80.5/contact) +
2D Compatibility (PS) -24575 + (NN) -8702 + (LL) 452
1D Compatibility (HY) -23600 + (ID) 5250
Total energy: -194862.0 ( -117.81 by residue)
QMean score : 0.520
(partial model without unconserved sides chains):
PDB file :
Tito_4YVG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YVG-query.scw
PDB file :
Tito_Scwrl_4YVG.pdb
: