Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFKKLINKKNTINNYNEELDSSNIPEHIAIIMDGNGRWAKKRKMPRIKGHYEGMQTIKKITRIASDIGVKYLTLYAFSTENWSRPESEVNYIMNLPVNFLKTFLPELIEKNVKVETIGFTDKLPKSTIEAINNAKEKTANNTGLKLIFAINYGGRAELVHSIKNMFDELHQQGLNSDIIDETYINNHLMTKDYPDPELLIRTSGEQRISNFLIWQVSYSEFIFNQKLWPDFDEDELIKCIKIYQSRQRRFGGLSEE
1V7U Chain:A ((20-239))
--------------------------HVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVWALDSEVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEKVQQGNLQPDQIDEEMLNQHVCMHELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAFANR----------
General information:
TITO was launched using:
RESULT:
Template:
1V7U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -102659 for 1703 contacts (-60.3/contact) +
2D Compatibility (PS) -23239 + (NN) -7322 + (LL) 1728
1D Compatibility (HY) -16400 + (ID) 4650
Total energy: -152542.0 ( -89.57 by residue)
QMean score : 0.619
(partial model without unconserved sides chains):
PDB file :
Tito_1V7U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1V7U-query.scw
PDB file :
Tito_Scwrl_1V7U.pdb
: