Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKLFIPYIMG---NKDLIENATLLSENGADIIEIGVPFSDPVADGPVIMEAGQQAIKQGITIDYIFNQLEKHGDQIKCNYVLMTYYNIICHYGEQAFFEKCRDTGVYGLIIPDLPYELSQRLKQQFSHYGVKIISLVAMTTDDKRIKDIVSHAEGFIYTVTMNATTGQNGAFHPELKRKIESIKAIANVPVVAGFGIRTPQHVAD-IKEVADGIVIGSEIVKRFKSNTREEIIRYLQSIQQTLNN
2DZU Chain:A ((7-233))
----LIPYLTAGDPDKQSTLNFLLALDEYAGAIELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRHSSTPIVLMTYYNPIYRAGVRNFLAEAKASGVNGILVVDLPVFHAKEFTEIAREEGIKTVFLAAPNTPDERLKVIDDMTTGFVYLVSLYGT----EEIPKTAYDLLRRAKRICRNKVAVGFGVSKREHVVSLLKEGANGVVVGSALVKIIGEKGRE---------------
General information:
TITO was launched using:
RESULT:
Template:
2DZU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -188696 for 1821 contacts (-103.6/contact) +
2D Compatibility (PS) -24550 + (NN) -12878 + (LL) 1904
1D Compatibility (HY) -12000 + (ID) 3650
Total energy: -239870.0 ( -131.72 by residue)
QMean score : 0.692
(partial model without unconserved sides chains):
PDB file :
Tito_2DZU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DZU-query.scw
PDB file :
Tito_Scwrl_2DZU.pdb
: