Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSQWKRISLLIVFALVFGIIAFFHESRLGKWIDNEVYEFIYSSESFITTSIMLGATKVGEVWAMLCISLLLVAYLMLKRHKIEALFFALTMALSGILNPALKNIFDRERPTLLRLIDITGFSFPSGHAMGSTAYFGSGIYLLNRLNQG------------------NSKGILIGLCAAMILLISISRVYLGVHYPTDIIAGIIGGVFCIILSTLLLRNKLIN |
| 1UP8 Chain:A ((477-578)) | --------------------------------------------------------------------------------------------------------------------SPFHPSYGSGHAVVAGACVTILKAFFDSGIEIDQVFEVDKDEDKLVKSSFKGTLTVAGELNKLADNIAIGRNMAGVHYFSDQFESLLLGEQVAIGILEEQSL---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1UP8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -50337 for 533 contacts (-94.4/contact) +
2D Compatibility (PS) -8417 + (NN) 2712 + (LL) 12232
1D Compatibility (HY) 800 + (ID) 850
Total energy: -43860.0 ( -82.29 by residue)
QMean score : 0.187
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