Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEHKSGFVSIIGRPNVGKSTFVNRVIGHKIAIMSDKAQTTRNKIQGVMTRDDAQIIFIDTPGIHKPKHKLGDYMMKVAKNTLSEIDAIMFMVNANEEIGRGDEYIIEMLKNVKTPVFLVLNKIDLVHPDELMPKIEEYQSYMDFTEIVPISALEGLNVDHFIDVLKTYLPEGPKYYPDDQISDHPEQFVVGEIIREKILHLTSEEIPHAIGVNVDRMVKESEDRVHIEATIYVERDSQKGIVIGKGGKKLKEVGKRARRDIEMLLGSKVYLELWVKVQRDWRNKVNFIRQIGYVEDQD
4DCS Chain:A ((26-206))
--------VAIVGRPNVGKSTIFNRIAGERIS-----------RIYSSAEWLNYDFNLIDTGG------PFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKL-------MRANIYDFYS-LGFGEPYPISGTHGLGLGDLLDAVAEHF----KNIPETKYNEEVIQFCL------------------------------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4DCS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -119613 for 1117 contacts (-107.1/contact) +
2D Compatibility (PS) -16398 + (NN) -4743 + (LL) 10060
1D Compatibility (HY) -11600 + (ID) 2600
Total energy: -144894.0 ( -129.72 by residue)
QMean score : 0.529
(partial model without unconserved sides chains):
PDB file :
Tito_4DCS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DCS-query.scw
PDB file :
Tito_Scwrl_4DCS.pdb
: