Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKATTIIGIAGGSGSGKTTVTNEIMKNL-------EGHSVALLAQDYYYK----DQKHLTFDERLETNYDHPFAFDNDLLIENLKDLKNGKAVEVPTYDYASHTRSDITIDFKPKDVIIVEGIFALENKVLRDMMDVKIYVDTDADLRILRRLTRDTKERGRSMDSVINQYLSVVRPMHDQFIEPTKKYADIIIPEGGSNKVAIDIMTTKIQSLVSKQ
1UFQ Chain:A ((22-230))
-----LIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQF--NFDHPDAFDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYSQEVRDLFQMKLFVDTDADTRLSRRVLRDISERGRDLEQILSQYITFVKPAFEEFCLPTKKYADVIIPRGADNLVAINLIVQHIQDILN--
General information:
TITO was launched using:
RESULT:
Template:
1UFQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -85393 for 1502 contacts (-56.9/contact) +
2D Compatibility (PS) -21812 + (NN) -11275 + (LL) 860
1D Compatibility (HY) -22000 + (ID) 4250
Total energy: -143870.0 ( -95.79 by residue)
QMean score : 0.483
(partial model without unconserved sides chains):
PDB file :
Tito_1UFQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1UFQ-query.scw
PDB file :
Tito_Scwrl_1UFQ.pdb
: