Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDDIQKIKKELSELVERVDDVEILANETADHVLELREEHKQHHNELRESHKELKDKQDKVVDENLEQTKILNRIEERYQTQVDVAQKNEEKTL-AQNKWLVGAIWALVTIVMIAVITASITALLP
1SGK Chain:A ((209-291))
----------------------------------IRDKTKTKIESLKE-HGPIKNKMSESPNKTVSEEKAKQYLEEFHQTALEHPELSELKTVTGTNPVFAGANYAAWAVNVAQVIDS-------
General information:
TITO was launched using:
RESULT:
Template:
1SGK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 5859 for 440 contacts (13.3/contact) +
2D Compatibility (PS) -8627 + (NN) -1814 + (LL) 3780
1D Compatibility (HY) -1600 + (ID) 1050
Total energy: -3452.0 ( -7.85 by residue)
QMean score : 0.406
(partial model without unconserved sides chains):
PDB file :
Tito_1SGK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SGK-query.scw
PDB file :
Tito_Scwrl_1SGK.pdb
: