Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MMKKIMTIFGTRPEAIKMAPLVKALEQEKMLEPIVVVTAQHREMLDSVLSTFE----IKPKYDLNIMKSGQTLSEITSKSITQLEQVIQLEKPDMVLVHGDTMTTFAGGLAAFYNQVPIGHVEAGLRSYDKYSPFPEEVNRQLVGVLADLHFAPTKNAASHLLSEGKYSESVVVTGNTAIDAMKYTV-----DDNYKSNIMDKYHDKKFILMTAHRRENIGKP--MENIFKAVRRLIDEYTDLALVYPMHKNPKVREVAQKI-----LGSHDRIELIEPLDVVDFHNFAKKSYFILTDSGGIQEEAPSFNKPVLVLRSVTERPEGVEAGTLKVIGTNKQNVYQAAKELIDDERLYHQMSEASNPYGDGFASERIVNHIKYYLNLITEKPSDF |
| 4NEQ Chain:A ((2-363)) | ---KLSIILGTRPEIIKLSPIIRALEKTNIDWHIIHTN-----NMDKIF--FEELNLPNPKYNLNI--GSGTHGEQTGKMLIEIEKVLLKEKPDVVVVQGDTNTVLAGALVASKLKIDVAHVEAGLRSFDRNM--PEEINRVLTDHISSYLFAPTEIAKNNLLREGIEENKIFVVGNTIVDATLQNLKIAEKNENVRAFFNSVVIDDDYFLLTLHRAENVDNKERLKNIVEGIFEIIEIY-DKAIIFSIH--PRTKKRLKEFNLFDKLKSNKKIKIIEPVGYLEFLMLEKNAELILTDSGGVQEEACILKVPCITLRDNTERPETVEVGANILVGDNKEKLIKAVEIMLNKKRNW------KNPFGNGKSGERIVRILTY------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 4NEQ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -158864 for 2843 contacts (-55.9/contact) +
2D Compatibility (PS) -37100 + (NN) -13820 + (LL) 2584
1D Compatibility (HY) -26800 + (ID) 6650
Total energy: -240650.0 ( -84.65 by residue)
QMean score : 0.546
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