Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVLYFAEIKDILQKAQEDIV--------LEQALTVQQFEDLLFERYP-QINNKKFQVAVNEEFVQKSDFIQPNDTVALIPPVSGG
1NVI Chain:D ((2-81))
VKVLFFAQVRELVGTDATEVAADFPTVEALRQHMAAQS------DRWALALEDGKLLAAVNQTLVSFDHPLTDGDEVAFFPPVTGG
General information:
TITO was launched using:
RESULT:
Template:
1NVI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35863 for 431 contacts (-83.2/contact) +
2D Compatibility (PS) -7598 + (NN) -936 + (LL) 644
1D Compatibility (HY) -7200 + (ID) 1100
Total energy: -52053.0 ( -120.77 by residue)
QMean score : 0.595
(partial model without unconserved sides chains):
PDB file :
Tito_1NVI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NVI-query.scw
PDB file :
Tito_Scwrl_1NVI.pdb
: