Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKLVTATTLTAGIGTALVGQAHHADAAENYTNYNNYNYNTTQTTTTTTTTTTTSSISHSGNLYTAGQCTWYVYDKVGG---EIGSTWGNANNWAAAAQG--------AGFT-----VNHTPSKGAILQSSE----GPFGHVAYVESVNSDGSVTISEMNYSGGPF---SVSSRTISASEAGNYNYIHI
3A2Z Chain:A ((51-169))
------------------------------------------------------------EYMGHKWQCVEFARRFLFLNYGVVFTDVGMAWEIFSLRFLREVVNDNILPLQAFPNGSPRAPVAGALLIWDKGGEFKDTGHVAIITQLHG-NKVRIAEQNVIHSPLPQGQQWTRELEMVV---------
General information:
TITO was launched using:
RESULT:
Template:
3A2Z.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28816 for 614 contacts (-46.9/contact) +
2D Compatibility (PS) -10303 + (NN) -4046 + (LL) 3684
1D Compatibility (HY) -4400 + (ID) 900
Total energy: -44781.0 ( -72.93 by residue)
QMean score : 0.340
(partial model without unconserved sides chains):
PDB file :
Tito_3A2Z.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3A2Z-query.scw
PDB file :
Tito_Scwrl_3A2Z.pdb
: