Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKFNVENEHVEVEIEKLYKFSPELVYEAWTKKDLLKQWFMTS-ARTNKEIEADVKEGGKYRIVDQQRNGKVNVIEGIYESLVMDEYV----KMTIGMPGLSETQDVIEVEFFERETGGTQMLFYYRSLVEKERRFTNLEYKQKKKEYHDAMVHGFELMFDKMYHVIETSTQQ
3RD6 Chain:A ((7-107))
---------HSTFTIERTYPQSPDRVFHAFADKATVRRWRVDGDG---AEFSFDFRVGGGEVSRFSYGGGPEVRLDAQFQDIVPDQRIVFSYRMAIGPQPMSASLTTVEL---------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3RD6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -16615 for 498 contacts (-33.4/contact) +
2D Compatibility (PS) -9788 + (NN) 2372 + (LL) 6360
1D Compatibility (HY) -2000 + (ID) 1100
Total energy: -20771.0 ( -41.71 by residue)
QMean score : 0.324
(partial model without unconserved sides chains):
PDB file :
Tito_3RD6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RD6-query.scw
PDB file :
Tito_Scwrl_3RD6.pdb
: