Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKDVKALKLMTLNDVLSQINGDMTLGIGTGSTMELLLPQMAQLIKERGYNITG-VCTSNKIAFLAKELGIKICEINDVDHIDLAIDGADEVDPSLNIIKGGGGALFREKVIDEMASRFVVVVDETKIVQYLGETFKLPVEVDKFNWYHILRKIESYADIKVERRVNEDVAFITDNGNYILDCKLPKGIDPYKFHEYLIHLTGVFETGYF-LDMADQVIVGTQEGVKILEK
1M0S Chain:A ((6-219))
------MKKLAAQAALQYVKADRIVGVGSGSTVNCFIEALGT-IKDK---IQGAVAASKESEELLRKQGIEVFNANDVSSLDIYVDGADEINPQKMMIKGGGAALTREKIVAALAKKFICIVDSSKQVDVLGSTFPLPVEVIPMARSQVGRKLAALGGSPEYRE-----GVVTDNGNVILDVHNFSILNPVEIEKELNNVAGVVTNGIFALRGADVVIVGTPEGAKVID-
General information:
TITO was launched using:
RESULT:
Template:
1M0S.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -121500 for 1872 contacts (-64.9/contact) +
2D Compatibility (PS) -23015 + (NN) -8187 + (LL) 1008
1D Compatibility (HY) -17600 + (ID) 4000
Total energy: -173294.0 ( -92.57 by residue)
QMean score : 0.541
(partial model without unconserved sides chains):
PDB file :
Tito_1M0S.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1M0S-query.scw
PDB file :
Tito_Scwrl_1M0S.pdb
: