Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSFYEFMQSFLGDDTPLGELVDWINQDSNFPREVKSHSEILSYFRTNPCPESISVPVIKRALSVFNQFTNVQ
4PPW Chain:A ((172-215))
---------------PQGTPVEWVEEESYFFRLSAYQDKLLDLYENNP------------------------
General information:
TITO was launched using:
RESULT:
Template:
4PPW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -574 for 97 contacts (-5.9/contact) +
2D Compatibility (PS) -3416 + (NN) -491 + (LL) 2828
1D Compatibility (HY) -2000 + (ID) 500
Total energy: -4153.0 ( -42.81 by residue)
QMean score : 0.348
(partial model without unconserved sides chains):
PDB file :
Tito_4PPW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4PPW-query.scw
PDB file :
Tito_Scwrl_4PPW.pdb
: