Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIYQKQRNTAETQLNISIS-DDQSPSHINTGVGFLNHMLTLFTFHSGLSLNIEAQGDIDVDDHHVTEDIGIVIGQLLLEMIKDKKHFVRYGTMYIPMDETLARVVVDISGRPYLSFNASLSKEKVGTFDTELVEEFFRAVVINARLTTHIDLIRGGNTHHEIEAIFKAFSRALGIALTATDDQR---VPSSKGVIE
4MU4 Chain:A ((10-202))
-IGEVKRETKQTNVSVKINLDGHGVSDSSTGIPFLDHMLDQLASHGLFDVHVRATGDTHIDDHHTNEDVALAIGTALLKALGERKGINRFGDFTAPLDEALIHVSLDLSGRPYLGYNLEIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQA-TESDPRRGGTIPSSKGVL-
General information:
TITO was launched using:
RESULT:
Template:
4MU4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -149688 for 1610 contacts (-93.0/contact) +
2D Compatibility (PS) -20052 + (NN) -7956 + (LL) 488
1D Compatibility (HY) -13200 + (ID) 4100
Total energy: -194508.0 ( -120.81 by residue)
QMean score : 0.486
(partial model without unconserved sides chains):
PDB file :
Tito_4MU4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4MU4-query.scw
PDB file :
Tito_Scwrl_4MU4.pdb
: