Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKLIFLIVIALVLSACNSNSSHAKELNDLEKKYNAHIGVYALDTKSGKEVKFNSDKRFAYASTSKAINSAILLEQVPYNKLNKKVHINKDDIVAYSPILEKYVGKDITLKELIEASMTYSDNTANNKIIKEIGGIKKVKQRLKELGDKVTNPVRYEIELNYYSPKSKKDTSTPAAFGKTLNKLIANGKLSKKNKNFLLDLMFNNKNGDTLIKDGVPKDYKVADKSGQAITYASRNDVAFVYPKGQSEPIVLVIFTNKDNKSDKPNDKLISETAKSVMKEF
1BLP Chain:A ((31-290))
------------------------KELNDLEKKYNAHIGVYALDTKSGKEVKFNSDKRFAYASTSKAINSAILLEQVPYNKLNKKVHINKDDIVAYSPILEKYVGKDITLKALIEASMTYSDNTANNKIIKEIGGIKKVKQRLKELGDKVTNPVR----LNYYSPKSKKNTSTPAAFGKTLNKLIANGKLSKENKKFLLDLMLNNKSGDTLIKDGVPKDYKVADKSGQAITYASRNDVAFVYPKGQSEPIVLVIFTNKDNKSDKPNDKLISETAKSVMKEF
General information:
TITO was launched using:
RESULT:
Template:
1BLP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -44607 for 2215 contacts (-20.1/contact) +
2D Compatibility (PS) -27357 + (NN) -10702 + (LL) 2932
1D Compatibility (HY) -31200 + (ID) 12350
Total energy: -123284.0 ( -55.66 by residue)
QMean score : 0.839
(partial model without unconserved sides chains):
PDB file :
Tito_1BLP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1BLP-query.scw
PDB file :
Tito_Scwrl_1BLP.pdb
: