Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLVSRFLNAIDPFNLGVLLSRFQIKNGCIYGVCSYKVSKFTPGYEESKARVLNALNILSKHQIWQSNQESVTKVKGTFVFILENDLHLDENSFYKKLLNLIIDNDFFNRSHLVTPSNGTNSHPELHRSITPREAARIQSFSDDYIFYGNKTSVCKQIGNAVPPLLALALGKAILKSARNDTNPSR
4YOC Chain:A ((945-996))
-------------------------------------------------------------------------------------------------------------------------HPEQHRVVSVRECARSQGFPDTYRLFGNILDKHRQVGNAVPPPLAKAIGLEIKLCMLAKA----
General information:
TITO was launched using:
RESULT:
Template:
4YOC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -10877 for 269 contacts (-40.4/contact) +
2D Compatibility (PS) -5503 + (NN) -2756 + (LL) 7980
1D Compatibility (HY) -1200 + (ID) 1350
Total energy: -13706.0 ( -50.95 by residue)
QMean score : 0.352
(partial model without unconserved sides chains):
PDB file :
Tito_4YOC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YOC-query.scw
PDB file :
Tito_Scwrl_4YOC.pdb
: