Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDRISTETELNWEFVESLNENALSDLEERLEIGFSDAFKDFIKRSNYGFSQLR-YFMVGNESYMFKHVLNFNLESLLIDFMQ-SLKEWLEPEEIVFANDGYGGYYLWNTTTDVVLFLDTDNGSK-KVL-LNLNMFLKKLESRG
2PAG Chain:A ((19-133))
--------------LELPDEDQLVEIEEQLFINIPFVFKEFLLTVSDVVYGSLEPVTVTD-------PQSH---TYLPEVCATAWDLGVPRELIPICQD-GEDYYCVEED-GTVLLWSA---LVTEESWESVWHWARDVWLES
General information:
TITO was launched using:
RESULT:
Template:
2PAG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -89315 for 794 contacts (-112.5/contact) +
2D Compatibility (PS) -11231 + (NN) -2809 + (LL) 1576
1D Compatibility (HY) -5200 + (ID) 950
Total energy: -107929.0 ( -135.93 by residue)
QMean score : 0.469
(partial model without unconserved sides chains):
PDB file :
Tito_2PAG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2PAG-query.scw
PDB file :
Tito_Scwrl_2PAG.pdb
: