Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQKEQEAQEIAKKAVKIVFFLGLVVVLLMMINLYMLINQINASAQMSHQIKKIEERLNQEQK
3LJM Chain:A ((13-27))
-------------------------------------------AALESKLQALEKKLEALEH
General information:
TITO was launched using:
RESULT:
Template:
3LJM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 2666 for 50 contacts (53.3/contact) +
2D Compatibility (PS) -1660 + (NN) -664 + (LL) 5408
1D Compatibility (HY) 1600 + (ID) 50
Total energy: 7300.0 ( 146.00 by residue)
QMean score : 0.537
(partial model without unconserved sides chains):
PDB file :
Tito_3LJM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LJM-query.scw
PDB file :
Tito_Scwrl_3LJM.pdb
: