Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGFLKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNNIKQDLGSLDFIVHSVAFAPKEALEGSLLET-SKSAFNTAMEISVYSLIELTNTLKPLLN-NGASVLTLSYLGSTKYMAHYNVMGLAKAALESAVRYLAVDLGKHNIRVNALSAGPIRTLASSGIADFRMILKWNEINAPLRKNVSLEEVGNAGMYLLSSLSNGVSGEVHFVDAGYHVMGMGAVEEKDNKATLLWDLHKEQ
4M87 Chain:A ((2-254))
-GFLQGKKILITGMISERSIAYGIAKACREQGAELAFTYVVDKLEERVRKMAAELDSELVFRCDVASDDEINQVFADLGKHWDGLDGLVHSIGFAPKEALSGDFLDSISREAFNTAHEISAYSLPALAKAARPMMRGRNSAIVALSYLGAVRAIPNYNVMGMAKASLEAGIRFTAACLGKEGIRCNGISAGPIKTLAASGIADFGKLLGHVAAHNPLRRNVTIEEVGNTAAFLLSDLSSGITGEITYVDGGYSINALS-------------------
General information:
TITO was launched using:
RESULT:
Template:
4M87.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -194679 for 2212 contacts (-88.0/contact) +
2D Compatibility (PS) -27545 + (NN) -9578 + (LL) 1600
1D Compatibility (HY) -26000 + (ID) 6250
Total energy: -262452.0 ( -118.65 by residue)
QMean score : 0.545
(partial model without unconserved sides chains):
PDB file :
Tito_4M87.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4M87-query.scw
PDB file :
Tito_Scwrl_4M87.pdb
: