Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLLVNDECIACDACREECPSEAIEEGDPIYSIDPDRCTECYGYDDDEPRCVSVCPVDAILPDPNNAESKEELKYKYEILKEQD
1FDN Chain:A ((1-51))
-AYVINEACISCGACEPECPVNAISSGDDRYVIDADTCIDC-------GACAGVCPVDAPVQA---------------------
General information:
TITO was launched using:
RESULT:
Template:
1FDN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -36341 for 317 contacts (-114.6/contact) +
2D Compatibility (PS) -5484 + (NN) -6139 + (LL) 1424
1D Compatibility (HY) -6000 + (ID) 1300
Total energy: -53840.0 ( -169.84 by residue)
QMean score : 0.650
(partial model without unconserved sides chains):
PDB file :
Tito_1FDN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1FDN-query.scw
PDB file :
Tito_Scwrl_1FDN.pdb
: