Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNAHKERLESNLLELLQEALA-SLNDSELNSLSVTKVECSKGKHHALVFV---L-SSDHKILSKLKKAEGLIRQFVLQASGWFKCPKLSFVLDDSLEKQLRLDAIFNEIAKGKDND
1PA4 Chain:A ((6-101))
----KERLENDIIRLINRTVIHEIYNETVKTGHVTHVKLSDDLLHVTVYLDCYNREQIDRVVGAFNQAKGVFSRVLAHNLYLAKAVQIHFVKDKAIDNAM----------------
General information:
TITO was launched using:
RESULT:
Template:
1PA4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -52817 for 611 contacts (-86.4/contact) +
2D Compatibility (PS) -9598 + (NN) -2458 + (LL) 1092
1D Compatibility (HY) -8000 + (ID) 900
Total energy: -72681.0 ( -118.95 by residue)
QMean score : 0.550
(partial model without unconserved sides chains):
PDB file :
Tito_1PA4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PA4-query.scw
PDB file :
Tito_Scwrl_1PA4.pdb
: