Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMREILTNRFFPSLFKKRLDFSNRVVLGLGSNLKNPLKILKSCFLYFKNHSKIGKIFSSPIYINPPFGYTNQPNFYNATIILKTSLGLRHFFALVFYIERRFGRARKRDFKDAPRTLDIDIIAFNQVILRQNDLTLPHPKWSERDSVLVPLTLQQILFKREEW
1TMJ Chain:A ((5-128))
--------------------------IAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSLAPEELLNHTQRIELQQGRVRKAE-RAGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFEIAPELVFPDG
General information:
TITO was launched using:
RESULT:
Template:
1TMJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -77197 for 877 contacts (-88.0/contact) +
2D Compatibility (PS) -13026 + (NN) -5892 + (LL) 2444
1D Compatibility (HY) -6800 + (ID) 2050
Total energy: -102521.0 ( -116.90 by residue)
QMean score : 0.545
(partial model without unconserved sides chains):
PDB file :
Tito_1TMJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TMJ-query.scw
PDB file :
Tito_Scwrl_1TMJ.pdb
: