Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MIRTPKHLTKQESVNLGAYYTPPYLVDCAYKLLKKHVGIENYTLLDTACGNKEFLKLHHPKK------IGADIDPKCDALIINALANPKRENYGISQD----EPL----IIVGNPPYNDRTSFIKQDIKNKDFIFEIDNDLKSR---------DLGISFL-KSFAILKPAFICV-LHPLSYLIKEANFKQLKLFKDHYRLLDAFVVSSKSFTKSNEFPIVIALYERGRMDYAGIRRFVFPTDCDTTLCLNDFDYIANYVDKYPNAKKVGACVGYFFPMRDINALKRNKTFLNAPSENAVRISQDKLIYYQYIHYFKEIAPKIPYYFGNLDIIIDHFAFLEIKDAFLKDKRARLEYFKKLFQGHPCEFD |
1AQJ Chain:A ((21-180)) | ------------------VETPPEVVDFMVSLAEAPRGGR---VLEPACAHGPFLRAFREAHGTGYRFVGVEIDPK--ALDLPPWAE------GILADFLLWEPGEAFDLILGNPPYG----IV------------AVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLE-DFALLREFLAREGKTSVYYLGEVFPQKKVSAVVIRFQKSGKGLSLWDTQESESGFTPILWAEYPHWEGEIIRFETEETRKLEISGMPLGDLFHIRFAARSPEFKKHPAVRKEPGPGLVPVLTGRNLKPGWVDYEKNHSGLWMPKERAKELRDFYATPHLVVAHTKGTRVVAAWDERAYPWRE |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1AQJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -47575 for 795 contacts (-59.8/contact) +
2D Compatibility (PS) -12572 + (NN) -2309 + (LL) 2512
1D Compatibility (HY) -10800 + (ID) 2350
Total energy: -73094.0 ( -91.94 by residue)
QMean score : 0.362
|
|
|