Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKTKAGFVALIGKPNAGKSTLLNTLLNAHLALVSHKANATRKLMKCIVPFKDKEGYESQIIFLDTPGLHHQEKLLNQCMLSQALKAMGDAELRVFLASVHDDLK--GYE--EFLSLCQKPHILALSKIDTATHKQVLQKLQEYQKYSSQFLALVPLSAKKSQNLNALLECISKHLSPSAWLFEKDLMSDEKMRDIYKEIIRESLFDFLSDEIPYESDVMIDKFIEEERIDKVYARIIVEKESQKKIVIGKNGVNIKRIGTNARLKMQEVGEKKVFLNLQVIAQKSWSKEEKSLQKLGYIYQRNRD |
| 2DYK Chain:A ((4-161)) | -------VVIVGRPNVGKSSLFNRLLKKRS-----------DLKEGVV-----ETDRGRFLLVDTGGLWSGDK-WEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKHELYLGPL-----YGLGFGDPIPTSSEHARGLEELLEAIWERLP--------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2DYK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -100404 for 1079 contacts (-93.1/contact) +
2D Compatibility (PS) -14928 + (NN) -3730 + (LL) 12928
1D Compatibility (HY) -9200 + (ID) 2400
Total energy: -117734.0 ( -109.11 by residue)
QMean score : 0.530
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