Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDTIKSIPIRTFILLYKSSPKCVVLASITVLFVGILPSLNILVMIKLIDIVVNLLQKHTHFEYSLLLPTLLLWGALLFLTHVFSGILSSLQTIIAEQFSINIITQLANKLTQVKNLNFFENKDHTIKLNTIHNGLHIRPLNYVSNLFFNLQRIIGLISLFGILFSISIYLPFIMIFATVPCILISNHIAKKHSASIDKLQDQKESMQNYLYSGLDNQKNKDNLLFNFMLNFHHKFIETKELYLNNFVKVAQKNLIFTIYADVLITTLSIALFFLMVFIILSKLIGVGAIAGYIQAFSSTQQQLQDLSFYGKWFFAINKYFENYFCILDYKIPKPETQIKLEEKIHSITFENISFSY-PNSKLIFENFNLSLHSNKIYALVGKNASGKSTLINLLLGFYTPNSGQIIINNKYPLQDLELNSYHQQMSAIFQDFSLYAGYSIDDNLFMQN-NITKEQLKQKREILKSFDENFQNCLNDCNNTLFGAQYNGVDFSLGQKQRIATMRAFLKPSNCIVLDEPSSAIDPIMEKEFLDFIFKKSQSKMALIITHRMNSVKQANEIIVLDQGKLIEQGNFETLMKK-QGLFCELFLKQQY |
| 2PMK Chain:A ((2-238)) | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDG-HDLALADPNWLRRQVGVVLQDNVLL-NRSIIDNISLANPGMSVEKVIYAAKLAGAHD--FISELREGYNTIVGEQ--GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQSD |
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General information:
TITO was launched using:
| RESULT:
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Template: 2PMK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -135623 for 1873 contacts (-72.4/contact) +
2D Compatibility (PS) -25232 + (NN) -8493 + (LL) 30712
1D Compatibility (HY) -18800 + (ID) 4200
Total energy: -161636.0 ( -86.30 by residue)
QMean score : 0.492
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