Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDKMNKVVLHKEYSGFVRFFHWVRALSIFTLIATGFYIAYPFLQPNSSFYKGVYLLQAYVRSFHVMFGFLLISALIFRTYLF-FTKESLMERRSFSQLL-SPKAWIDQMKAYFLIS--DKPHTKGLYNPIQLVAYFTLVVLIVLMSLSGIVLYYNVYHEGLGAFLANAFKWFEALCGGLANVRFIHHLATWGFILFVPVHVYMVFFHSIRYDSSGADSMINGYGYTKE
1KQF Chain:C ((2-192))
----SKSKMIVRTKFIDRACHWTVVICFFLVALSGISFFFPTLQWLT----QTFGTPQMGRILHPFFGIAIFVALMF-MFVRFVHHN--------IPDKKDIP-WLLNIVEVLKGNEHKVAD-VGKYNAGQKMMFWSIMSMIFVLLVTGVIIW----RPYFA-Q---YF-----PMQVVRYSLLIHAAAGIILIHAILIHMYMAFWVK-----GSIKGMIEGKVSRRW
General information:
TITO was launched using:
RESULT:
Template:
1KQF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -143132 for 1269 contacts (-112.8/contact) +
2D Compatibility (PS) -18779 + (NN) -2898 + (LL) 3296
1D Compatibility (HY) -12800 + (ID) 1750
Total energy: -176063.0 ( -138.74 by residue)
QMean score : 0.179
(partial model without unconserved sides chains):
PDB file :
Tito_1KQF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KQF-query.scw
PDB file :
Tito_Scwrl_1KQF.pdb
: