Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFNFFKKIVNKIKGEEVKEKKRESVPKEELEEILIGFDIQYDLIESLLKHLGDLITPKQLEVALLRFVRGESYYDKTRLKTITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKALLGAGDTFRAAAVKQLQLWGEKLNVQVISAKEGSDPSSLAYNTIESAIAKNIDEVFIDTAGRLHNQTNLKNELSKIAHTCSKVLKDAPFYKFLILDGTQGSSGLTQAKIFHETLALDGVIMTKLDGTSKGGAILSVLYELKLPILYLGMGEKEDDLIAFDEERFIEDLVDAVFVEQ
2IYL Chain:D ((43-283))
-----------------------------------------DLKEAVKEKLVGMLEPD---ATLRKL-----GFNPQKP--VEPKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDT------TQLSEWGKRLSIPVIQGPEGTDPAALAYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQ--LEQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPFDPEAFVEALLED-----
General information:
TITO was launched using:
RESULT:
Template:
2IYL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -163691 for 1817 contacts (-90.1/contact) +
2D Compatibility (PS) -24683 + (NN) -13251 + (LL) 5724
1D Compatibility (HY) -18800 + (ID) 5000
Total energy: -219701.0 ( -120.91 by residue)
QMean score : 0.591
(partial model without unconserved sides chains):
PDB file :
Tito_2IYL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2IYL-query.scw
PDB file :
Tito_Scwrl_2IYL.pdb
: