Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQAKIKNKRVLVKFSGEALAGDNQFGIDIHVLDHIAKEIRSLVENDIEVGIVIGGGNIIRGVSAAQGGIIRRTSGDYMGMLATVINAVAMQEALEHIGLDTRVQSAIEIKEICESYIYRKAIRHLEKGRVVIFGAGTGNPFFTTDTAATLRAIEIGSDLIIKATKVDGIYDKDPNKFKDAKKLDTLSYNDALIGDIEVMDDTAISLAKDNKLPIVVCNMFKKGNLLQVIKHQQGVFSMVK
2BNF Chain:A ((5-234))
--AKPVYKRILLKLSGEALQGTEGFGIDASILDRMAQEIKELVELGIQVGVVIGGGNLFRGAGLAKAGM-NRVVGDHMGMLATVMNGLAMRDALHRAYVNARLMSAIPLN-VCDSYSWAEAISLLRNNRVVILSAGTGNPFFTTDSAACLRGIEIEANVVLKATKVDGVFTADPAKDPTATMYEQLTYSEVLEKELKVMDLAAFTLARDHKLPIRVFNMNKPGALRRVVMGEKEGTLITE
General information:
TITO was launched using:
RESULT:
Template:
2BNF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -163634 for 1886 contacts (-86.8/contact) +
2D Compatibility (PS) -25427 + (NN) -12968 + (LL) 636
1D Compatibility (HY) -24000 + (ID) 5800
Total energy: -231193.0 ( -122.58 by residue)
QMean score : 0.579
(partial model without unconserved sides chains):
PDB file :
Tito_2BNF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2BNF-query.scw
PDB file :
Tito_Scwrl_2BNF.pdb
: