Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQTIHIGVLSASDRASKGVYEDLSGKAIQEVLSEYLLNPLEFHYEIVADERDLIEKSLIKMCDEYQCDLVVTTGGTGPALRDITPEATKKVCQKMLPGFGELMRMTSLKYVPTAILSRQSAGIRNKSLIINLPGKPKSIRECLEAVFPAIPYCVDLILGNYMQVNEKNIQAFRPKQ
4NWO Chain:A ((3-173))
--KAKIGIVTVSDRASAGITADISGKAIILALNLYLTSEWEPIYQVIPDEQDVIETTLIKMADEQDCCLIVTTGGTGPAKRDVTPEATEAVCDRMMPGFGELMRAESLKEVPTAILSRQTAGLRGDSLIVNLPGDPASISDCLLAVFPAIPYCIDLMEGPYLECNEAMIKPFR---
General information:
TITO was launched using:
RESULT:
Template:
4NWO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -115390 for 1422 contacts (-81.1/contact) +
2D Compatibility (PS) -17855 + (NN) -4085 + (LL) 372
1D Compatibility (HY) -17600 + (ID) 5200
Total energy: -159758.0 ( -112.35 by residue)
QMean score : 0.412
(partial model without unconserved sides chains):
PDB file :
Tito_4NWO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4NWO-query.scw
PDB file :
Tito_Scwrl_4NWO.pdb
: