Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAVITGASSGIGLECVLMLLN---QGYKVYALSR---------HATLCVALNHALCECVDIDVSDSNALKEVFLNISAKEDHCDVLINSAGYGVFGSVEDTPIEEVKKQFSVNFFALCEVVQLCLPLLKNKPYSKIFNLSSIAGRVSMLFLGHYSASKHALEAYSDALRLELKPFNVQVCLIEPGPVKSNW-EKTAFENDERKDSVYALEVNAAKSFYS------GVYQKAL-NAKEVAQKIVFLSMSHKIKARYLIGLKTQLLLALYQILPSSWYDSLFRLVVLGRKRDA |
| 1FDV Chain:A ((6-265)) | --LITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVT--EGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLMGLPFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTAFMEKVLGSPEEVLDRT---DIHTFHRFYQYLALSKQVFREAAQNPEEVAEVFLTALRAPKPTLRYFT---TERFLPLLRMRLDDPSGSNYVTAMHREVFG- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1FDV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -165200 for 1903 contacts (-86.8/contact) +
2D Compatibility (PS) -25267 + (NN) -9436 + (LL) 1216
1D Compatibility (HY) -16800 + (ID) 3900
Total energy: -219387.0 ( -115.28 by residue)
QMean score : 0.497
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