Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMKAVFINVWYLLLTIILLIIIWRIIKLVLKDKNDSGDKGLG
2L8S Chain:A ((6-26))
-----RVPLWVILLSAFAGLLLLMLLILALWKIGFFKRPLKK
General information:
TITO was launched using:
RESULT:
Template:
2L8S.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -14679 for 82 contacts (-179.0/contact) +
2D Compatibility (PS) -2106 + (NN) -541 + (LL) 816
1D Compatibility (HY) -4000 + (ID) 150
Total energy: -20660.0 ( -251.95 by residue)
QMean score : 0.818
(partial model without unconserved sides chains):
PDB file :
Tito_2L8S.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2L8S-query.scw
PDB file :
Tito_Scwrl_2L8S.pdb
: