Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKISCLLLVISLFGGFLNASSLYEKLVNKETISVGTEGIYPPFTYHDKEGKLTGYDVEVARELAKELGVKIKFHETSWDIMLTGLKSGRFDMVANQVSLTTKKRQAAFDKSLPYSYSGTIMLVRKDENRIKDIRDIKGLKAANTLSSTYGEIAFKYDA--QIVSVDSMAQALLLVAQKRADLTLNSSLAILNYLNTHK--NSPFKIAWESKEKDGGASFVINKHQEKALELINQAMRRLINKGVLKRLGEQFFGKDVSQP
3VVF Chain:A ((29-257))
-----------------------FEEIKRSGEIRIGTEGAFPPFNYFDERNQLTGFEVDLGNAIAERLGLKPRWIAQSFDTLLIQLNQGRFDFVIASHGI-TEERARAVDFTNPHYCTGGVIVSRKGGPRTA--KDLQGKVVGVQVGTTYMEAAQKIPGIKEVRTYQRDPDALQDLLAGRIDTWITDRFVAKEAIKERKLENTLQVGELVFQER---VAMAVAKGNKSLLDALNRALAELMQDGTYARISQKWFGEDVRCK
General information:
TITO was launched using:
RESULT:
Template:
3VVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -96634 for 1870 contacts (-51.7/contact) +
2D Compatibility (PS) -24823 + (NN) -13227 + (LL) 1680
1D Compatibility (HY) -10800 + (ID) 3100
Total energy: -146904.0 ( -78.56 by residue)
QMean score : 0.513
(partial model without unconserved sides chains):
PDB file :
Tito_3VVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VVF-query.scw
PDB file :
Tito_Scwrl_3VVF.pdb
: