Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIDQLQIVPKAQVLKNNTMERSLALALQKVSIPRSTSAHRTLLINHFLEQVILQNIKTIAFRGIIKLTPHNENPLLKPYSAFITLNS--IIRACAYCPL
2JVM Chain:A ((36-60))
------------------------------------------------------------------------GALGHP-RVWLSIPHETGFVECGYCDR
General information:
TITO was launched using:
RESULT:
Template:
2JVM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -4848 for 75 contacts (-64.6/contact) +
2D Compatibility (PS) -2437 + (NN) -16 + (LL) 6820
1D Compatibility (HY) -2400 + (ID) 250
Total energy: -3131.0 ( -41.75 by residue)
QMean score : 0.361
(partial model without unconserved sides chains):
PDB file :
Tito_2JVM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JVM-query.scw
PDB file :
Tito_Scwrl_2JVM.pdb
: