Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKFSVLTLFPQLILPYFEDSILKRALEKNLFELEVLNLRDFSANKYQKADHTLIGGGAGQILDPEMIENALHSVKNPKH----TIFLSAVGKPFKQIDAMRLAQKKHVVLVCGRYEGFDERSIELGADEVFCIGDFILTGGELGALCLIDSIARHIQGVLGNAQSLENESFENNYLETPNFANAVFKSKEINKIPAPLEYSKGNHAKIKQLKLDLSKLRTKFYRLDLFKQHKS
4YVJ Chain:A ((21-245))
MWIGVISLFPEMFKAITEFGVTGRAVKHNLLKVECWNPRDFTFDKHKTVDDRPYGGGPGMLMMVQPLRDAIHTAKAAAGEGAKVIYLSPQGRKLDQGGVTELAQNQKLILVCGRYEGIDERLIQTEIDEEWSIGDYVLTGGELPAMTLIDAVARFIPGV---------DSFADGLLDCPHYT----RPEVLEGLTVPPVLMSGHHEEIRKWRLKQSLQRTWLRRPELLEGLAL
General information:
TITO was launched using:
RESULT:
Template:
4YVJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -122983 for 1520 contacts (-80.9/contact) +
2D Compatibility (PS) -22899 + (NN) -8764 + (LL) 748
1D Compatibility (HY) -16000 + (ID) 3900
Total energy: -173798.0 ( -114.34 by residue)
QMean score : 0.467
(partial model without unconserved sides chains):
PDB file :
Tito_4YVJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YVJ-query.scw
PDB file :
Tito_Scwrl_4YVJ.pdb
: