Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDQEILDVLIVGAGPGGIATVVECEIAGVKKVLLCEKTESHSG------------------MLEKFYKAGKRIDKDYKKQVVELKG---HIPFKDSFKEETLENFTNLLKEHRITPSYKTD-IESVKKEGELF-----KITTTSNTT--YHAKFVVVAIGKMGQPNRPTTYKIPVALSKQVVFSINDCKENE----KTLVIGGGNSAVEYAIALCKTTP--TTLNYRKKEFSRINEDNAKNLQEVLDNNTLKSKLGVDIESLEEDNTQIKVNFTDNTS---ESFDRLLYAIGGSTPLE---FFKRCSLELDPSTNIPVVKENLESNNIPNLFIVGDILFKSGASIA-TALNHGYDVAIEIAKRLQS |
| 1LPF Chain:A ((4-341)) | -----FDVVVIGAGPGGYVAAIRAAQLGLKTACI-EKYIGKEGKVALGGTCLNVGCIPSKALLDSSYKY-HEAKEAFKVHGIEAKGVTIDVPAMVARKANIVKNLTG-----GIATLFKANGVTSFEGHGKLLANKQVEVTGLDGKTQVLEAENVIIASG-----SRPVEIP-PAPLSDDIIVDSTGALEFQAVPKKLGVIGAGVIGLELGSVWARLGAEVTVLEALDKFLPAADEQIAKEALKVLTKQGLNIRLGARVTASEVKKKQVTVTFTDANGEQKETFDKLIVAV-GRRPVTTDLLAADSGVTLDERGFIYV--DDHCKTSVPGVFAIGDVV--RGAMLAHKASEEGVMVAERIAGHKAQ |
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General information:
TITO was launched using:
| RESULT:
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Template: 1LPF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -120290 for 2275 contacts (-52.9/contact) +
2D Compatibility (PS) -30770 + (NN) 12 + (LL) 1572
1D Compatibility (HY) -16400 + (ID) 4400
Total energy: -170276.0 ( -74.85 by residue)
QMean score : 0.404
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