Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKNFYDWIKEFVRDQGEFIAQQSGWLELERSSYAKLIAQTISHVLNGGSLLVSADSSRRWFLNYILSNLNPKDLKERPLLSVIDFNASSFYPKNDANLSLATIELTYQNPMFWHVGRVENEGLKTLLLSKIPSFLWLFEELKEDCLLLKEHDSLLDYKLLQLFKLFENALFSALYNKVAL |
2O8D Chain:A ((26-98)) | -------------------------------------------------------------------------MPEKPTTTVRLFDRGDFYTAHGEDALLAAREVFKTQGVIKYMGPAGAKNLQSVVLSKMN-----FESFVKDLLLVRQYRVEVYKNRAGSKENDWYLAYKASPGNLSQ |
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General information:
TITO was launched using:
| RESULT:
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Template: 2O8D.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -5445 for 450 contacts (-12.1/contact) +
2D Compatibility (PS) -7679 + (NN) -2771 + (LL) 5712
1D Compatibility (HY) -5200 + (ID) 950
Total energy: -16333.0 ( -36.30 by residue)
QMean score : 0.216
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